From your report, I would recommend you ensure mating faces of crank to flywheel are perfectly flat and undamaged(bearing-blue plus true-test in lathe), then tightening all NEW bolts evenly(don't use old bolts after what they've suffered), using 'thread-locker' and correctly tensioned with a pro tension wrench.
Ensure threads have not been compromised, or else all the above will be for nought.
"GOOD BETTER BEST: NEVER LET IT REST: UNTIL YOUR GOOD IS BETTER, AND YOUR BETTER, BEST"
( Furphy WW1 HORSE-DRAWN water-tank end-plates)