How did you set the valve clearance, if you used the "hot" settings then it will definitely tap loudly. Otherwise if you actually had a problem of an eaten lobe you would see it straight away in your oil.
You don't really need to break the cam in. Start the engine without the rocker cover and make sure the spray bar is doing its job. Unless you are running heavy valve springs (100lbs +) with really aggresive lobes it would be hard to wipe out a lobe especially on break in. There really isn't anything to "break in" on a follower style cam. Its more important to prime the oil system but how many people do that.
Break in proceedures are aimed primarily at OHV motors like V8's with flat tappet cams. The revs are to ensure sufficent oil pressure and lifter rotation.
I personally have never seen a flat lobe from incorrect break in, only worn out or damaged from incorrect tolerances.